I used a small very strong magnet. You can move it from side to side and locate the struts and/or the strut flanges. It is very effective at finding the center of the flange, or any steel (except for stainless). Worked great for me when I installed my solar system. My '02 MCI only has a limited number of rivets so it wasn't as clear as you would think.
Magnets work,I pop a string line from the riviets on the curve on the sides,I wouldn't drill for screws anyway,the 3M 5100 adhesive will hold the brackets forever,that is what is used to hold the sides and roof on the MCI D
The more modern MCIs do not rivet the roof to the struts on the main surface. They anchor the edges where it wraps under the drip-rail, but use sikaflex on the top struts.